PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482079.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 300aa    MW: 32822.1 Da    PI: 9.8883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ ++ ++G+g W+tI +          R+  ++k++w++ 
   XP_016482079.1  5 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 56
                     79***********************************66***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.941161IPR017930Myb domain
SuperFamilySSF466891.18E-15274IPR009057Homeodomain-like
SMARTSM007178.7E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-13457IPR009057Homeodomain-like
PfamPF002492.1E-7556IPR001005SANT/Myb domain
CDDcd116604.12E-18657No hitNo description
PROSITE profilePS5150424.214114188IPR005818Linker histone H1/H5, domain H15
SMARTSM005263.9E-13118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.5E-16119196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-15119193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.3E-8125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI LKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMTVMA  60
NGWSSREQAR LAVKRTKQAP RQDGSPVADT TTAESDEEAA EAQAATTSSS SPQIHGSRKS  120
MIRLDNLIME AISSLKEPGG SNKTAIAAYI EDQYWAPPNF IRLLSGKLKY LTATGKLIKI  180
KRKYRVAPTS TPSDRRRNLS SPFLDSRQRI FSKVDRDDMD MLSTSQIDLE LANKMRNMTP  240
QEAAAAAAQA VAEAESAIAE AEEAARDAEA AEADAEAAKA FSDATKTLHG RSAPRMMIRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-110HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606064.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_009606065.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_009606066.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_009606067.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016482077.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016482078.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016482079.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016482080.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016482081.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK41e-100TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E11e-161M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595421e-161(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-89telomere repeat binding factor 1